Protege 5.5.0-beta-9 available for download

classic Classic list List threaded Threaded
1 message Options
Reply | Threaded
Open this post in threaded view
|

Protege 5.5.0-beta-9 available for download

Matthew Horridge-2
Administrator
Dear Protégé User,

The Protégé Team is pleased to announce the release of Protégé 5.5.0-beta-9.  This is mainly a bug fix release but it also includes some enhancements for working ontologies that contain non-unique labels.  Full details of the release can be found below.  

You can download Protégé-5.5.0-beta-9 from our releases page at https://protege.stanford.edu/products.php#desktop-protege.  We are nearing the end of the 5.5.0 beta period and we encourage all Protégé users to download and use this latest beta release of Protégé.

Best wishes,

The Protégé Team


Protégé 5.5.0-beta-9

New Features

  • Entity names in the various hierarchies are now disambiguated if the entity short name or label is not unique. For example in the CL ontology, "cell" is used as the label for two classes. The OBO identifiers are now shown in round brackets next to the occurrences of the "cell" class in the hierarchy. Previously, one had to look at tooltips to disambiguate such occurrences. image

  • Single class names in the class description view are now disambiguated. For example in the CL ontology, "cell" is used as the label for two classes. The OBO identifiers are now shown in round brackets next to the occurrences of the "cell" class in the class description view. In the screenshot below cell CL:0000000 is equivalent to the cell class from the gene ontology GO:0005623. image

Bug Fixes

  • Fixed a bug that could cause some unicode characters to display as boxes on Windows and Linux. (protegeproject/protege#714)
  • Fixed a bug that could cause the incorrect display of the asserted hierarchy in the presence of certain forms of equivalent classes axioms. (protegeproject/protege#847)
  • Entity icons are now aligned with entity names in the various hierarchies when a large font size is selected. (protegeproject/protege#620)
  • Fixed a bug that caused annotations on different individuals axioms to be dropped on save. (protegeproject/protege#747)
  • Fixed a bug that caused Protege to hang when saving OBO files that encoded non-simple axioms in the functional syntax (protegeproject/protege#501)
  • Fixed a bug that could cause Protege to start up off the screen if it had previously been open on a secondary screen and that screen is no longer available. (protegeproject/protege#804)
  • Fixed a bug that caused Protege to prompt for missing imports if the imports were loaded via HTTP redirects (protegeproject/protege#839)
  • Fixed a bug that could cause Protege to hang for a long time when loading or saving ontologies from folders with a large number of sub-folders and sub-files. (protegeproject/protege#619)
  • Fixed links to the OWL spec. (protegeproject/protege#792)
  • Fixed a bug where the metrics view would only show the metrics of the first opened ontology (protegeproject/protege#816)

Other improvements


_______________________________________________
protege-user mailing list
[hidden email]
https://mailman.stanford.edu/mailman/listinfo/protege-user