Protege 5 Failure to start running program

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Protege 5 Failure to start running program

mordredmordred
Good Morning,

I am a newcomer to Protege and am attempting to run Protege-5.0.0-beta-15 but so far without success.

Hardware : Dell Inspiron laptop with 4Gb RAM
                  Pentium(R) Dual-Core CPU  T4300 @2.10GHz  2.1GHz

Operating System : Windows 7(SP1) Home Premium 64 bit   + all updates            

What I have done

1) downloaded and unzipped the file containg the program :----> SUCCESS
    File unzipped to : G:\ONTOLOGY SUPPORT\protege-5.0.0-beta-15\

2) checked my Java Environment :----> SUCCESS
    java version "1.8.0_25"
    Java(TM) SE Runtime Environment (build 1.8.0_25-b18)
    Java HotSpot(TM) Client VM (build 25.25-b02, mixed mode)
   ( Java Security set to Very High with Protege specified as 'safe' )
 
3) Attempted ro run Protege :----> FAILURE
    Go to G:\ONTOLOGY SUPPORT\protege-5.0.0-beta-15\
    Double click run --- Windows Batch File


   Every attempt results in a 'cmd' window displaying the following message  

G:\ONTOLOGY SUPPORT\protege-5.0.0-beta-15\Protege_5.0_beta>java -Dlog4j.configuration=file:log4j.xml -DentityExpansionLi
mit=100000000 -Dfile.encoding=utf-8 -Dorg.protege.plugin.dir=plugins -classpath bin/felix.jar;
bin/ProtegeLauncher.jar org.protege.osgi.framework.Launcher

   and then the ___program hangs__ with no further display; just a flashing cursor..

 -- any and all help in resolving the problem will be much appreciated.

Thank you
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Re: Protege 5 Failure to start running program

Tania Tudorache
Thank you for the detailed report.

Could you please try to run the bat file in the console, and post the
output?

Open a command window (in previous windows versions, you could click on
the start button and type "cmd", might be the same in Win 7), then
change the directory, by typing in the terminal window:

cd "G:\ONTOLOGY SUPPORT\protege-5.0.0-beta-15\Protege_5.0_beta"

then type

run.bat

Please report the output from the terminal.

It would be also helpful, if you could report the output of

java -version

that you run in the same directory. (It's likely the same with what you have, but it is good to double-check).

Thanks,
Tania



On 01/09/2015 04:43 AM, mordredmordred wrote:

> Good Morning,
>
> I am a newcomer to Protege and am attempting to run Protege-5.0.0-beta-15
> but so far without success.
>
> Hardware : Dell Inspiron laptop with 4Gb RAM
>                    Pentium(R) Dual-Core CPU  T4300 @2.10GHz  2.1GHz
>
> Operating System : Windows 7(SP1) Home Premium 64 bit   + all updates
>
> What I have done
>
> 1) downloaded and unzipped the file containg the program :----> SUCCESS
>      File unzipped to : G:\ONTOLOGY SUPPORT\protege-5.0.0-beta-15\
>
> 2) checked my Java Environment :----> SUCCESS
>      java version "1.8.0_25"
>      Java(TM) SE Runtime Environment (build 1.8.0_25-b18)
>      Java HotSpot(TM) Client VM (build 25.25-b02, mixed mode)
>     ( Java Security set to Very High with Protege specified as 'safe' )
>  
> 3) Attempted ro run Protege :----> FAILURE
>      Go to G:\ONTOLOGY SUPPORT\protege-5.0.0-beta-15\
>      Double click run --- Windows Batch File
>
>
>     Every attempt results in a 'cmd' window displaying the following message
>
> G:\ONTOLOGY SUPPORT\protege-5.0.0-beta-15\Protege_5.0_beta>java
> -Dlog4j.configuration=file:log4j.xml -DentityExpansionLi
> mit=100000000 -Dfile.encoding=utf-8 -Dorg.protege.plugin.dir=plugins
> -classpath bin/felix.jar;
> bin/ProtegeLauncher.jar org.protege.osgi.framework.Launcher
>
>     and then the ___program hangs__ with no further display; just a flashing
> cursor..
>
>   -- any and all help in resolving the problem will be much appreciated.
>
> Thank you
>
>
>
>
> --
> View this message in context: http://protege-project.136.n4.nabble.com/Protege-5-Failure-to-start-running-program-tp4662093.html
> Sent from the Protege User mailing list archive at Nabble.com.
> _______________________________________________
> protege-user mailing list
> [hidden email]
> https://mailman.stanford.edu/mailman/listinfo/protege-user


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Re: Protege 5 Failure to start running program

mordredmordred
Dear Tania,

many thanks for your reply.  I have done as you suggested __but__ in the event I am afraid that serendipity has revealed the soulution.
The 'problem' was actually down to my impatience -- grovelling apology -- and the fact that my laptop is rather slow.

Please read the following output from a cmd window -- the *** ANNOTATIONS reveal the 'truth'

C:\Users\Michael Message>G:

G:\>cd "ONTOLOGY SUPPORT"

G:\ONTOLOGY SUPPORT>cd "protege-5.0.0-beta-15\Protege_5.0_beta"

G:\ONTOLOGY SUPPORT\protege-5.0.0-beta-15\Protege_5.0_beta>run.bat

***ANNOTATION 1:---->
     This output appears immediately the 'run.bat' file is invoked -- it is identical with the previously posted data and the program 'appears' to hang.

G:\ONTOLOGY SUPPORT\protege-5.0.0-beta-15\Protege_5.0_beta>java -Dlog4j.configuration=file:log4j.xml -DentityExpansionLi
mit=100000000 -Dfile.encoding=utf-8 -Dorg.protege.plugin.dir=plugins -classpath bin/felix.jar;bin/ProtegeLauncher.jar or
g.protege.osgi.framework.Launcher

***ANNOTATION 2:---->
     At this point I went off to anser a telephone call, lasting some 2 -3 minutes and on my return the cmd window had been updated with the following output  __and__ the first Protege window was displayed

Starting Protege Desktop (Version 5.0.0, Build = beta-15)
Platform:
    Java: JVM 1.8.0_25-b18 Memory: 259M
    Language: en, Country: GB
    Framework: Apache Software Foundation (1.5)
    OS: windows7 (6.1)
    Processor: x86
Plugin: Cajun Visualization Library (1.0.2)
Plugin: Guava: Google Core Libraries for Java (17.0.0)
Plugin: DL Query (1.1.4)
Plugin: OWLViz (4.1.4)
Plugin: OWL Code Generation Plug-in (1.0.2)
Plugin: OWL Difference (4.1.1)
Plugin: Protege Editor OWL (5.0.0.beta-15)
Plugin: Protege SPARQL Plugin (1.0.0)
Plugin: Explanation Workbench (1.0.0)
Plugin: Protege HermiT Integration (1.0.0)
Plugin: OntoGraf (1.0.3)
Plugin: OWL Difference Engine (1.0.1)
Plugin: OWLAPI RDF Library (1.0.2)
Plugin: OWLAPI Distribution (3.5.0)
        Cajun Visualization Library Plugin has no plugin.xml resource
        Guava: Google Core Libraries for Java Plugin has no plugin.xml resource
        OWL Difference Engine Plugin has no plugin.xml resource
        OWLAPI RDF Library Plugin has no plugin.xml resource
        OWLAPI Distribution Plugin has no plugin.xml resource
Using OWL API version 3.5.0
Rebuilding entity indices...
... rebuilt in 10 ms
Setting active ontology to OntologyID(OntologyIRI(<http://www.semanticweb.org/michaelmessage/ontologies/2015/0/untitled-
ontology-3>))
Rebuilding entity indices...
... rebuilt in 0 ms
... active ontology changed
Cannot generate ontology catalog for ontology at http://www.semanticweb.org/michaelmessage/ontologies/2015/0/untitled-on
tology-3
Setting active ontology to OntologyID(OntologyIRI(<http://www.semanticweb.org/michaelmessage/ontologies/2015/0/untitled-
ontology-3>))
Rebuilding entity indices...
... rebuilt in 10 ms
... active ontology changed
Auto-update last performed: Sat Jan 10 12:40:41 GMT 2015
Auto-update has been run today.  Not running it again.

***ANNOTATION 3---->
    I quit Protege and was returned to the cmd window with the prompt as

G:\ONTOLOGY SUPPORT\protege-5.0.0-beta-15\Protege_5.0_beta>java -version

***ANNOTATION 4 ---->
    Checked my java environment with java -version which gave. The result is __almost__ the same as that which I posted previously with the exception that the data for Java HotSpot(TM) __now__ shows not only mixed mode but also sharing.

java version "1.8.0_25"
Java(TM) SE Runtime Environment (build 1.8.0_25-b18)
Java HotSpot(TM) Client VM (build 25.25-b02, mixed mode, sharing)

*********************************

So my apologies for taking up your time -- I had no idea that the program would take so long to load; clearly I need a more capable one.

With my thanks and regards

As ever


Michael


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Re: Protege 5 Failure to start running program

mordredmordred
In reply to this post by Tania Tudorache
Dear Tania,

thank you so much for your reply.

I have followed your advice and have posted the results to the Protege
Forum.

The short story is that in fact -- sincere apology -- I manufacured the
problem for myself.

The ***ANNOTATIONS in the post reveal the embarassing truth.

Again with my thanks

Take care

Michael


On 2015-01-09 18:46, Tania Tudorache wrote:

> Thank you for the detailed report.
>
> Could you please try to run the bat file in the console, and post the
> output?
>
> Open a command window (in previous windows versions, you could click
> on the start button and type "cmd", might be the same in Win 7), then
> change the directory, by typing in the terminal window:
>
> cd "G:\ONTOLOGY SUPPORT\protege-5.0.0-beta-15\Protege_5.0_beta"
>
> then type
>
> run.bat
>
> Please report the output from the terminal.
>
> It would be also helpful, if you could report the output of
>
> java -version
>
> that you run in the same directory. (It's likely the same with what
> you have, but it is good to double-check).
>
> Thanks,
> Tania
>
>
>
> On 01/09/2015 04:43 AM, mordredmordred wrote:
>> Good Morning,
>>
>> I am a newcomer to Protege and am attempting to run
>> Protege-5.0.0-beta-15
>> but so far without success.
>>
>> Hardware : Dell Inspiron laptop with 4Gb RAM
>>                    Pentium(R) Dual-Core CPU  T4300 @2.10GHz  2.1GHz
>>
>> Operating System : Windows 7(SP1) Home Premium 64 bit   + all updates
>>
>> What I have done
>>
>> 1) downloaded and unzipped the file containg the program :---->
>> SUCCESS
>>      File unzipped to : G:\ONTOLOGY SUPPORT\protege-5.0.0-beta-15\
>>
>> 2) checked my Java Environment :----> SUCCESS
>>      java version "1.8.0_25"
>>      Java(TM) SE Runtime Environment (build 1.8.0_25-b18)
>>      Java HotSpot(TM) Client VM (build 25.25-b02, mixed mode)
>>     ( Java Security set to Very High with Protege specified as 'safe'
>> )
>>   3) Attempted ro run Protege :----> FAILURE
>>      Go to G:\ONTOLOGY SUPPORT\protege-5.0.0-beta-15\
>>      Double click run --- Windows Batch File
>>
>>
>>     Every attempt results in a 'cmd' window displaying the following
>> message
>>
>> G:\ONTOLOGY SUPPORT\protege-5.0.0-beta-15\Protege_5.0_beta>java
>> -Dlog4j.configuration=file:log4j.xml -DentityExpansionLi
>> mit=100000000 -Dfile.encoding=utf-8 -Dorg.protege.plugin.dir=plugins
>> -classpath bin/felix.jar;
>> bin/ProtegeLauncher.jar org.protege.osgi.framework.Launcher
>>
>>     and then the ___program hangs__ with no further display; just a
>> flashing
>> cursor..
>>
>>   -- any and all help in resolving the problem will be much
>> appreciated.
>>
>> Thank you
>>
>>
>>
>>
>> --
>> View this message in context:
>> http://protege-project.136.n4.nabble.com/Protege-5-Failure-to-start-running-program-tp4662093.html
>> Sent from the Protege User mailing list archive at Nabble.com.
>> _______________________________________________
>> protege-user mailing list
>> [hidden email]
>> https://mailman.stanford.edu/mailman/listinfo/protege-user
>
>
> _______________________________________________
> protege-user mailing list
> [hidden email]
> https://mailman.stanford.edu/mailman/listinfo/protege-user
_______________________________________________
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[hidden email]
https://mailman.stanford.edu/mailman/listinfo/protege-user
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Re: Protege 5 Failure to start running program

Tania Tudorache
Dear Michael,

I am happy to see that the problem is resolved!

Protege should not take 2-3 minutes to start. If you are still
experiencing that, we should try to debug the problem.

Best,
Tania


On 01/10/2015 02:37 PM, Dr M.A. Message wrote:

> Dear Tania,
>
> thank you so much for your reply.
>
> I have followed your advice and have posted the results to the Protege
> Forum.
>
> The short story is that in fact -- sincere apology -- I manufacured
> the problem for myself.
>
> The ***ANNOTATIONS in the post reveal the embarassing truth.
>
> Again with my thanks
>
> Take care
>
> Michael
>
>
> On 2015-01-09 18:46, Tania Tudorache wrote:
>> Thank you for the detailed report.
>>
>> Could you please try to run the bat file in the console, and post the
>> output?
>>
>> Open a command window (in previous windows versions, you could click
>> on the start button and type "cmd", might be the same in Win 7), then
>> change the directory, by typing in the terminal window:
>>
>> cd "G:\ONTOLOGY SUPPORT\protege-5.0.0-beta-15\Protege_5.0_beta"
>>
>> then type
>>
>> run.bat
>>
>> Please report the output from the terminal.
>>
>> It would be also helpful, if you could report the output of
>>
>> java -version
>>
>> that you run in the same directory. (It's likely the same with what
>> you have, but it is good to double-check).
>>
>> Thanks,
>> Tania
>>
>>
>>
>> On 01/09/2015 04:43 AM, mordredmordred wrote:
>>> Good Morning,
>>>
>>> I am a newcomer to Protege and am attempting to run
>>> Protege-5.0.0-beta-15
>>> but so far without success.
>>>
>>> Hardware : Dell Inspiron laptop with 4Gb RAM
>>>                    Pentium(R) Dual-Core CPU  T4300 @2.10GHz 2.1GHz
>>>
>>> Operating System : Windows 7(SP1) Home Premium 64 bit   + all updates
>>>
>>> What I have done
>>>
>>> 1) downloaded and unzipped the file containg the program :----> SUCCESS
>>>      File unzipped to : G:\ONTOLOGY SUPPORT\protege-5.0.0-beta-15\
>>>
>>> 2) checked my Java Environment :----> SUCCESS
>>>      java version "1.8.0_25"
>>>      Java(TM) SE Runtime Environment (build 1.8.0_25-b18)
>>>      Java HotSpot(TM) Client VM (build 25.25-b02, mixed mode)
>>>     ( Java Security set to Very High with Protege specified as 'safe' )
>>>   3) Attempted ro run Protege :----> FAILURE
>>>      Go to G:\ONTOLOGY SUPPORT\protege-5.0.0-beta-15\
>>>      Double click run --- Windows Batch File
>>>
>>>
>>>     Every attempt results in a 'cmd' window displaying the following
>>> message
>>>
>>> G:\ONTOLOGY SUPPORT\protege-5.0.0-beta-15\Protege_5.0_beta>java
>>> -Dlog4j.configuration=file:log4j.xml -DentityExpansionLi
>>> mit=100000000 -Dfile.encoding=utf-8 -Dorg.protege.plugin.dir=plugins
>>> -classpath bin/felix.jar;
>>> bin/ProtegeLauncher.jar org.protege.osgi.framework.Launcher
>>>
>>>     and then the ___program hangs__ with no further display; just a
>>> flashing
>>> cursor..
>>>
>>>   -- any and all help in resolving the problem will be much
>>> appreciated.
>>>
>>> Thank you
>>>
>>>
>>>
>>>
>>> --
>>> View this message in context:
>>> http://protege-project.136.n4.nabble.com/Protege-5-Failure-to-start-running-program-tp4662093.html
>>> Sent from the Protege User mailing list archive at Nabble.com.
>>> _______________________________________________
>>> protege-user mailing list
>>> [hidden email]
>>> https://mailman.stanford.edu/mailman/listinfo/protege-user
>>
>>
>> _______________________________________________
>> protege-user mailing list
>> [hidden email]
>> https://mailman.stanford.edu/mailman/listinfo/protege-user
> _______________________________________________
> protege-user mailing list
> [hidden email]
> https://mailman.stanford.edu/mailman/listinfo/protege-user


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Re: Protege 5 Failure to start running program

sharmi m
In reply to this post by mordredmordred
Dear Users,


I had installed pellet reasoner with protege4.3 and working on that.
I felt a need to go for swrl-built ins.


After connected with net, I could get installed a version of pellet(using plugin update option), which shows as pellet increment in protege( i do not know what version of pellet makes it as pellet increment in protege).

Now swrl-built ins ( ex: i am using graterThan - ) are successfully reasoned out by pellet increment reasoner.

My problem is the following.

I have netbean java project. from the project i tried to execute the SWRL built-ins. which shows error related to unidentified reasoner.
Which version of pellet support SWRL built-ins?

Now i m puzzled with what version of pellet to be included in java library to execute the swrl built ins(which works fine with protege) from java.

can you kindly tell me?
Hope i have explained the pbm.
anything unclear, pl let me know.


I am struggling with the issue for few days


On Fri, Jan 9, 2015 at 6:13 PM, mordredmordred <[hidden email]> wrote:
Good Morning,

I am a newcomer to Protege and am attempting to run Protege-5.0.0-beta-15
but so far without success.

Hardware : Dell Inspiron laptop with 4Gb RAM
                  Pentium(R) Dual-Core CPU  T4300 @2.10GHz  2.1GHz

Operating System : Windows 7(SP1) Home Premium 64 bit   + all updates

What I have done

1) downloaded and unzipped the file containg the program :----> SUCCESS
    File unzipped to : G:\ONTOLOGY SUPPORT\protege-5.0.0-beta-15\

2) checked my Java Environment :----> SUCCESS
    java version "1.8.0_25"
    Java(TM) SE Runtime Environment (build 1.8.0_25-b18)
    Java HotSpot(TM) Client VM (build 25.25-b02, mixed mode)
   ( Java Security set to Very High with Protege specified as 'safe' )

3) Attempted ro run Protege :----> FAILURE
    Go to G:\ONTOLOGY SUPPORT\protege-5.0.0-beta-15\
    Double click run --- Windows Batch File


   Every attempt results in a 'cmd' window displaying the following message

G:\ONTOLOGY SUPPORT\protege-5.0.0-beta-15\Protege_5.0_beta>java
-Dlog4j.configuration=file:log4j.xml -DentityExpansionLi
mit=100000000 -Dfile.encoding=utf-8 -Dorg.protege.plugin.dir=plugins
-classpath bin/felix.jar;
bin/ProtegeLauncher.jar org.protege.osgi.framework.Launcher

   and then the ___program hangs__ with no further display; just a flashing
cursor..

 -- any and all help in resolving the problem will be much appreciated.

Thank you




--
View this message in context: http://protege-project.136.n4.nabble.com/Protege-5-Failure-to-start-running-program-tp4662093.html
Sent from the Protege User mailing list archive at Nabble.com.
_______________________________________________
protege-user mailing list
[hidden email]
https://mailman.stanford.edu/mailman/listinfo/protege-user


_______________________________________________
protege-user mailing list
[hidden email]
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