bug in processing redirects when loading ontology

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bug in processing redirects when loading ontology

Alan Ruttenberg-2
Try open from URI
http://purl.obolibrary.org/obo/chebi/internal/chebi-disjoints.owl

It fails.

A sniff of the network traffic shows that it dies after seeing the redirect. 

Confusingly, the error reported is:

org.xml.sax.SAXParseException: White spaces are required between publicId and systemId.

I checked and the OWLAPI handles this just find, using the method loadOntologyFromOntologyDocument


-Alan

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Re: bug in processing redirects when loading ontology

Chris Mungall-2
Actually, my version of the OWLAPI fails on this:

--
--

I think this relates to the fix Ignazio just committed to the OWLAPI (which I haven't had time to test)


On May 16, 2013, at 12:19 PM, Alan Ruttenberg wrote:

Try open from URI
http://purl.obolibrary.org/obo/chebi/internal/chebi-disjoints.owl

It fails.

A sniff of the network traffic shows that it dies after seeing the redirect. 

Confusingly, the error reported is:

org.xml.sax.SAXParseException: White spaces are required between publicId and systemId.

I checked and the OWLAPI handles this just find, using the method loadOntologyFromOntologyDocument


-Alan
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Re: bug in processing redirects when loading ontology

Alan Ruttenberg-2
What's the code you used? I tried this from LSW which hasn't updated the owlapi for a while, though it is possible it's something I patched myself. 

In LSW2 (Bona branch)  (load-ontology ... ) just works. 

-Alan

On Thursday, May 16, 2013, Chris Mungall wrote:
Actually, my version of the OWLAPI fails on this:

--
--

I think this relates to the fix Ignazio just committed to the OWLAPI (which I haven't had time to test)


On May 16, 2013, at 12:19 PM, Alan Ruttenberg wrote:

Try open from URI
http://purl.obolibrary.org/obo/chebi/internal/chebi-disjoints.owl

It fails.

A sniff of the network traffic shows that it dies after seeing the redirect. 

Confusingly, the error reported is:

org.xml.sax.SAXParseException: White spaces are required between publicId and systemId.

I checked and the OWLAPI handles this just find, using the method loadOntologyFromOntologyDocument


-Alan
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