The Drools-based reasoner is not available as a standard reasoner in Protege. It is only available to the SWRLTab plugin (via the SWRLAPI). It may become available at a later date, though there is not timeline for this work at the moment.
Note that the built-ins used to implement SQWRL (e.g., makeBag, select) should only be used in SQWRL queries. They should not be used in SWRL rules since they would likely be 'closing the world' in terms of the operations they perform.